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SRX14427437: Nanopore Sequencing
1 OXFORD_NANOPORE (PromethION) run: 63.5M spots, 29.9G bases, 26.5Gb downloads

Design: Oxford nanopore sequencing libraries were prepared using the SQK-PCS109 (Oxford Nanopore, Oxford, UK, p/n SQK-LSK109) according to manufacturer's instructions and run for 72 hours on PromethION R9.4.1 flow cells.
Submitted by: Johns Hopkins University
Study: Archilochus colubris Genome sequencing
show Abstracthide Abstract
Genomic studies of the ruby-throated hummingbird are warranted and necessary for further understanding of these fine-tuned metabolic systems. Here we produce a chromosome level hybrid genome assembly of the ruby-throated hummingbird. Because many of the proteins involved in cellular metabolism are quite large, we annotated the genome using a combination of Illumina RNA-seq and Oxford Nanopore cDNA sequencing from muscle and liver tissues to identify full coding sequences and multiple encoded isoforms.
Sample: fed_rep1
SAMN26525213 • SRS12236067 • All experiments • All runs
Library:
Name: m96_ONT
Instrument: PromethION
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: RANDOM
Layout: SINGLE
Runs: 1 run, 63.5M spots, 29.9G bases, 26.5Gb
Run# of Spots# of BasesSizePublished
SRR1828964163,500,92629.9G26.5Gb2022-03-24

ID:
20516185

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